This Table of Contents organizes all of my blog posts by topic, as if this blog were a book.
Machine Learning
What’s the difference between AI, machine learning, and deep learning?
Introduction to Neural Networks
Multi-label vs. Multi-class Classification: Sigmoid vs. Softmax
The History of Convolutional Neural Networks
How Computers See: Intro to Convolutional Neural Networks
Convolutional Neural Networks (CNNs) in 5 minutes
Convolution vs. Cross-Correlation
Connections: Log Likelihood, Cross Entropy, KL Divergence, Logistic Regression, and Neural Networks
Machine Learning Coding Tutorials in Python
How to Organize Machine Learning Projects: Python, Git, Anaconda, Code, and NO Jupyter Notebooks
Using Predefined and Pretrained CNNs in PyTorch: Tutorial with Code
Designing Custom 2D and 3D CNNs in PyTorch: Tutorial with Code
Building Custom Image Datasets in PyTorch: Tutorial with Code
Multi-GPU Training in PyTorch: Data and Model Parallelism
Numpy and Pandas Quick Reference
Performance Metrics
Measuring Performance: Accuracy
Measuring Performance: The Confusion Matrix
Measuring Performance: AUC (AUROC)
Comparing AUCs of Machine Learning Models with DeLong’s Test
Measuring Performance: AUPRC and Average Precision
The Complete Guide to AUC and Average Precision: Simulations and Visualizations
Attention & Transformers
Learn to Pay Attention! Trainable Visual Attention in CNNs
Squeeze-and-Excitation Networks
The Transformer: Attention Is All You Need
Gradient-Based Convolutional Neural Network Explanation Methods
CNN Heat Maps: Saliency/Backpropagation
CNN Heat Maps: Gradients vs. DeconvNets vs. Guided Backpropagation
Class Model Visualization for CNNs
CNN Heat Maps: Class Activation Mapping (CAM)
Grad-CAM: Visual Explanations for Deep Networks
Guided Grad-CAM is Broken! Sanity Checks for Saliency Maps
Model Explanation is Not Weakly Supervised Segmentation
AI Safety, Large Language Models, and Artificial General Intelligence
Human and Artificial General Intelligence Arises From Next Token Prediction
ChatGPT is Not a Doctor: Hidden Dangers in Seeking Medical Advice from LLMs
Bias, Toxicity, and Jailbreaking Large Language Models (LLMs)
AI Alignment and Moral Philosophy for Artificial General Intelligence
Is “Good” AI Harder than “Bad” AI?
Job Loss from AI: Labor Market Impact of Large Language Models
Debiasing ChatGPT: Creating an LLM that isn’t racist or sexist
Sparks of Artificial General Intelligence: Highlights from 95 Pages
Just for Fun: Llama2 Chats with ChatGPT3.5
Hands in Human Dreams Look AI-Generated
Machine Learning for Medical Applications
Automated Chest X-Ray Interpretation
Automatic Interpretation of Chest CT Scans with Machine Learning
Chest CT Scan Machine Learning in 5 minutes
COVID-19 Chest CT Scan Analysis: Clinical Recommendations and Machine Learning Applications
Regularization for Neural Networks with Framingham Case Study
Segmentation: U-Net, Mask R-CNN, and Medical Applications
Preparing Medical Data for Machine Learning
Best Use of Train/Val/Test Splits, with Tips for Medical Data
Downloading and Preprocessing Medical Images in Bulk: DICOM to NumPy with Python
Intro to Sentence Analysis for Radiology Label Extraction (SARLE)
RAD-ChestCT: Publicly Available Multi-Abnormality CT Scan Dataset
Preparing EHR & Tabular Data for Neural Networks (Code Included!)
Medical Data
Genomics, Transcriptomics, and Proteomics for Data Scientists (DNA, RNA, Protein)
Introduction to Medical Abbreviations
Representing EHR data: ICD codes vs. CCS codes
All About Drugs: Intro to Pharmacology
Medicine: Radiology: Anatomy
Anatomy for Radiology: Terms of Location
Anatomy for Radiology: Abdomen
Medicine: Radiology: Chest X-Rays
Radiology: Normal Chest X-Rays
Radiology: Abnormal Chest X-Rays Part I
Radiology: Abnormal Chest X-Rays Part II
Radiology: Abnormal Chest X-Rays Part III
Medicine: Terminology & Anatomy Videos
Terminology and Anatomy of the Integumentary System
Terminology and Anatomy of the Respiratory System
Terminology and Anatomy of the Urinary System
Terminology and Anatomy of the Cardiovascular System
Terminology and Hormones of the Endocrine System
Terminology and Anatomy of the Gastrointestinal System
Terminology and Anatomy of the Head, Eyes, Ears, Nose, and Throat (HEENT)
Terminology and Anatomy of the Musculoskeletal System
Terminology and Anatomy of the Nervous System
Careers & Miscellaneous
Earning an M.D. and a Ph.D. in Computer Science: Becoming a Physician Scientist
How to Ace Your Job Interview: Advice From A Tech CEO
Surviving the Wards While Pregnant: Bring a Chair on Rounds and Other Tips
Glass Box 